PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17303
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 322aa    MW: 35484 Da    PI: 4.8538
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17303genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.7e-091021252247
                      T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqky 47 
                      g W+tIa ++  gRt++++k++w+++
         EMT17303 102 G-WSTIATHLE-GRTDNEIKNYWNTH 125
                      4.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-983133IPR009057Homeodomain-like
PROSITE profilePS500906.80684126IPR017877Myb-like domain
PfamPF002492.2E-6102125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-12102142IPR009057Homeodomain-like
CDDcd001671.26E-5103126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSRGKFDDER TSGIMVMSTQ IQKQHRIELQ EQEPRCQYIW SYVARSPEQP PTLTYIVHTP  60
IVYGIGHTQT LPMLMAKAEE EWRENSQLLQ HLSRVPCQTV MGWSTIATHL EGRTDNEIKN  120
YWNTHIRKKL LRMGVDPVTH QQLPPDQTNH DVNGAAPALL PEALLLAAAA VSLGGLDPGA  180
LRQAQVLQQL LQAIGSNNST TGLIANLAAA NTLLNSSSSI VPNQMNYLQT GYLCNTSNFA  240
EQHVVQQQLT NDTSPGTSTF AAAERADQLC NTAASYNVAP AGDWPPAQEF GGLLEPMMEL  300
PGLCSLEGDS FWKDILEDSY CL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700905e-51AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds.
GenBankAM1569045e-51AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0344845e-51BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds.
GenBankBT0543985e-51BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586915e-51HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.23e-62PREDICTED: transcription factor MYB39
TrEMBLR7W8250.0R7W825_AEGTA; Transcription factor MYB39
STRINGMLOC_20358.12e-95(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-17myb domain protein 93